PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10008958m
Common NameCARUB_v10008958mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 493aa    MW: 54618.7 Da    PI: 8.7911
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10008958mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.3e-05123145123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C+ C+k F r  nL+ H r H
  Carubv10008958m 123 FICEVCNKGFQRDQNLQLHKRGH 145
                      89******************988 PP

2zf-C2H214.10.00014200222123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC++C+k +  +s+ k H +t+
  Carubv10008958m 200 WKCEKCSKKYAVQSDWKAHAKTC 222
                      58******************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.99E-7122145No hitNo description
Gene3DG3DSA:3.30.160.604.8E-6122145IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.824123145IPR007087Zinc finger, C2H2
PfamPF121713.8E-5123145IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.026123145IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280125145IPR007087Zinc finger, C2H2
SMARTSM0035545165195IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-4188221IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.99E-7195220No hitNo description
SMARTSM00355140200220IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
RKREREIINK SFFSHPQSPL SRLSPSSSSS SFRMMMNREM IFHQQQQQVE ENMSNLTSAS  60
GDQASVSSGN RTETSGSNLI HQQEQCFVPQ SSIKRKRNQP GNPDPEAEVM ALSPKTLMAT  120
NRFICEVCNK GFQRDQNLQL HKRGHNLPWK LKQRSNKDVV RKKVYICPEP GCVHNHPSRA  180
LGDLTGIKKH FFRKHGEKKW KCEKCSKKYA VQSDWKAHAK TCGTKEYKCD CGTLFSRRDS  240
FITHRAFCDA LAEESARAIP NPILIQSSAS PSHHGHHQTQ QQNITFSTSS QNVISSNNLH  300
APPMKQEESH HHFQNIPPWL ASSNPNNPNG SSNNGNLFPP LASSAPTGRS NFHHPSAAMS  360
ATALLQKAAQ MGSKKSSTAP EEEEKPSRSS YNNLITTTMA EMMTSPSGPA GFGFQDYYMM  420
NHHGGGGEEA FNGGFVAGDD KNDVVDDGGG ETRDFLGLRS LMSHNEILSF ANNLGNCLNS  480
SASEEQQHSH QD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149162KLKQRSNKDVVRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0909980.0AY090998.1 Arabidopsis thaliana putative zinc finger protein (At1g55110) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006307340.10.0hypothetical protein CARUB_v10008958mg, partial
SwissprotQ8H1F50.0IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLR0ISA40.0R0ISA4_9BRAS; Uncharacterized protein (Fragment)
STRINGAl_scaffold_0001_48850.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.10.0indeterminate(ID)-domain 7